SALMONELLA GENETIC STOCK CENTRE (SGSC)

Publications by the Sanderson Lab

1) REFEREED JOURNAL PUBLICATIONS

McClelland M., K.E. Sanderson, Spieth J., Clifton S.W., Latreille P., Courtney L., Porwollik S., Ali J., Dante M., Du F., Hou S., Layman D., Leonard S., Nguyen C., Scott K., Holmes A., Grewal N., Mulvaney E., Ryan, E., Sun H., Florea L., Miller W., Stoneking T., Nhan M., Waterston R.,Wilson R.K. 2001. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature 413(6858):852-6.

Pronk L.M., K.E. Sanderson. 2001. Intervening sequences in rrl genes and fragmentation of 23S rRNA in genera of the family Enterobacteriaceae. J Bacteriol. 183(19):5782-7.

Pabbaraju K., K.E. Sanderson. 2000. Sequence diversity of intervening sequences (IVSs) in the 23S ribosomal RNA in Salmonella spp. Gene. 253(1):55-66.

Pabbaraju, K., W.L. Miller and K.E. Sanderson. 2000. Distribution of intervening sequences in the genes for 23S rRNA and rRNA fragmentation among strains of the SAlmonella Reference Collection B (SARB) and SARC Sets. J Bacteriol. 182:1923-1929.

Miller, W.L., Kanti Pabbaraju and K.E. Sanderson. 2000. Fragmentation of 23S rRNA in strains of Proteus and Providencia results from intervening sequences in the rrn (rRNA) genes. J. Bacteriol. 182: 1109-1117.

Liu, S.-L., A.B. Schryvers, K.E. Sanderson and R.N. Johnston. 1999. Bacterial phylogenetic clusters revealed by genome structure. J. Bacteriol.181: 6747-6755.

Ng, I., S.-L. Liu and K.E. Sanderson. 1999. Role of genomic rearrangements in producing new ribotypes of Salmonella typhi. J. Bacteriol.181: 3536-3541.

Sanderson, K.E. and S.-L. Liu. 1998. Chromosomal rearrangements in Salmonella spp. Medical Journal of Indonesia S2-2: 30-37.

Thong, K.L., S. Nair, G. Subramaniam, S. Puthucheary, R. Yassin, Y.M. Cheong, S.L. Liu, K.E. Sanderson, A.M. Cordano, T. Pang and the International Multcenter Group on the Molecular Epidemiology and Genetic Diversity of S. typhi (P. Sudarmono, E. Soewandojo, I,. Handojo, M. Padmidewi, S. Sarasombath, M. Passey, B. Combes, R. Chaudhry. 1998. Genetic dynamics and molecular epidemiology of Salmonella typhi. Medical Journal of Indonesia S2-2: 147-150.

Liu, S.-L., and K. E. Sanderson. 1998. Homologous recombination between rrn operons rearranges the chromosome in host-specialized species of Salmonella. FEMS Letters 159: 6747-6755.

Mattatall, N., and K.E. Sanderson. 1998. Rnase III deficient Salmonella typhimurium LT2 contains intervening sequences in its 23S rRNA. FEMS Letters 159: 179-185.

K. E. Sanderson and S.-L. Liu. 1998. Chromosomal rearrangements in enteric bacteria. Electrophoresis 19: 569-572.

Liu, S.-L., and K. E. Sanderson. 1996. The genome of Salmonella typhi is highly plastic. Proc. Nat. Acad. Sci., USA, 93: 10303-10308.

Mattatall, N.R., D. A. Daines, S.-L. Liu, and K.E Sanderson. 1996. Salmonella typhi contains identical intervening sequences in all seven rrl genes. J. Bacteriol. 178: 5323-5328.

Mattatall, N., and K.E. Sanderson. 1996. Salmonella typhimurium LT2 possesses three distinct 23S ribosomal RNA intervening sequences (IVSs). J. Bacteriol 178: 2272-2278.

Collinson, S.K., S.-L Liu, S.C. Clouthier, P.A. Banser, J.L. Doran, K.E. Sanderson, and W.W. Kay. 1996. Mapping of four fimbrin genes, agfA, fimA, sefA, and sefD on the Salmonella typhimurium and Salmonella enteritidis XbaI-BlnI genomic cleavage maps. Gene 169: 75-80.

Liu, S.-L., and K.E. Sanderson. 1995. The genomic map of Salmonella paratyphi A is inverted by a homologous recombination between genes rrnH and rrnG. J. Bacteriol. 177: 6585-6592.

Liu, S.-L., and K.E. Sanderson. 1995. The genomic cleavage map of Salmonella typhi Ty2. J. Bacteriol. 177: 5099-5107.

Sanderson, K.E., A. Hessel, and K.E. Rudd. 1995. The genetic map of Salmonella typhimurium, edition VIII. Microbiological Reviews 59: 241-303.

Liu, S.-L., and K.E. Sanderson. 1995. I-CeuI reveals conservation of the genome of independent strains of Salmonella typhimurium. J. Bacteriol. 177: 3355-3357.

Liu, S.-L., and K.E. Sanderson. 1995. Rearrangements in the genome of the bacterium Salmonella typhi. Proc. Natl. Acad. Sci. USA 92: 1018-1022.

 

2) OTHER REFEREED PUBLICATIONS

2A) Chapters in books

Sanderson, K.E., M. McClelland, and S.-L. Liu. 1999. "Stable" genomes. In Organization of the prokaryotic genome. R. L. Charlebois,(ed). American Society for Microbiology Press, Washington, DC., pps, 217-233. Liu, S.-L., and K.E. Sanderson. 1998. Bacterial genome analysis. In Methods in Microbiology: Bacterial Pathogenesis, P.H. Williams, J. Ketley, and G. Salmond (eds),

Liu, S.-L., and K.E. Sanderson. 1998. Bacterial genome analysis. In Methods in Microbiology: Bacterial Pathogenesis, P.H. Williams, J. Ketley, and G. Salmond (eds)

Sanderson, K,E., S.-L. Liu, A. Hessel, and M. McClelland. 1998. Genome evolution in the Salmonellae. Chapter 22 in "Bacterial genomes: physical structure and analysis", F.J. de Bruijn, J.R. Lupski, and G.M. Weinstock (eds), Chapman and Hall, International Thomson Publishing, pps 230-239.

McClelland, M., K.K. Wong, and K. E. Sanderson. 1998. Physical mapping and fingerprinting of bacterial genomes using rare cutting restriction enzymes. Chapter 24 in "Bacterial genomes: physical structure and analysis", F.J. de Bruijn, J.R. Lupski, and G.M. Weinstock (eds), Chapman and Hall, International Thomson Publishing, pps 253-311.

Shu-Lin Liu and K.E. Sanderson. 1998. Salmonella typhi. . Chapter 77 in "Bacterial genomes: physical structure and analysis", F.J. de Bruijn, J.R. Lupski, and G.M. Weinstock (eds), Chapman and Hall, International Thomson Publishing, pps 733-735.

Shu-Lin Liu, A. Hessel, M. McClelland, and K.E. Sanderson. 1998. Salmonella typhimurium. . Chapter 78 in "Bacterial genomes: physical structure and analysis", F.J. de Bruijn, J.R. Lupski, and G.M. Weinstock (eds), Chapman and Hall, International Thomson Publishing, pps 737-739.

Sanderson, K.E. 1996. F-mediated conjugation, F+ strains, and Hfr strains of Salmonella typhimurium and S. abony. In Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, Edition 2, F.C. Neidhardt, R. Curtiss III, C.A. Gross, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W. Reznikoff, M. Riley, M. Schaechter and H.E. Umbarger (eds.). American Society for Microbiology, Washington, D.C. , pps 2406-2412.

Sanderson, K.E., A. Hessel, and B.A.D. Stocker. 1996. Salmonella typhimurium strains used in genetic analysis. In Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, Edition 2, F.C. Neidhardt, R. Curtiss III, C.A. Gross, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W. Reznikoff, M. Riley, M. Schaechter and H.E. Umbarger (eds.). American Society for Microbiology, Washington, D.C., pps 2496-2503).

E. Altman, J. R. Roth, A. Hessel, and K.E. Sanderson. 1996. Transposon insertions on the chromosome of Salmonella typhimurium LT2. In Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, Edition 2, F.C. Neidhardt, R. Curtiss III, C.A. Gross, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W. Reznikoff, M. Riley, M. Schaechter and H.E. Umbarger (eds.). American Society for Microbiology, Washington, D.C. , pps 2613-2626.

A. Hessel and K.E. Sanderson. 1996. The electronic database of the strains in the Salmonella Genetic Stock Centre. In Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, Edition 2, F.C. Neidhardt, R. Curtiss III, C.A. Gross, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W. Reznikoff, M. Riley, M. Schaechter and H.E. Umbarger (eds.). American Society for Microbiology, Washington, D.C. , pps 2504-2510.

Sanderson, K.E., A. Hessel, S.-L. Liu, and K.E. Rudd. 1996. The genetic map of Salmonella typhimurium, edition VIII. In Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, Edition 2, F.C. Neidhardt, R. Curtiss III, C.A. Gross, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W. Reznikoff, M. Riley, M. Schaechter and H.E. Umbarger (eds.). American Society for Microbiology, Washington, D.C, pps 1903-1999.

K. Sanderson, P.R. MacLachlan, and A. Hessel. 1995. Electrotransformation in Salmonella. In Electroporation Protocols for Microorganisms, Methods in Molecular Biology 47: 115-123, J.A. Nickoloff (editor), Humana Press, N.Y

 

3) PRESENTATIONS AT MEETINGS, PUBLISHED AS ABSTRACTS

Liu, S.-L., Stewart,V., Brost, R., and K.E. Sanderson. 2000. Variability in the size of the genome of the enteric bacteria Salmonella, Escherichia, Klebsiella, and Morganella. Presented at the Annual Meeting of the Canadian Society for Microbiologists, Winnipeg, Manitoba, Canada, June 2000 (Abstract).

Pabbaraju, K., Pronk, L., Miller, W.L. and K.E. Sanderson. 2000. Intervening sequences (IVSs) in the rrn genes in Salmonella, Proteus, Providencia, Citrobacter, and Klebsiella lead to fragmented rRNA. Presented at the Annual Meeting of the Canadian Society for Microbiologists, Winnipeg, Manitoba, Canada, June 2000 (Abstract).

Liu, S.-L., Brost, R., Tam, H. and K.E. Sanderson. 2000. The genome of Morganella morganii. Presented at the 100th Annual Meeting of the American Society for Microbiology, Los Angeles, CA USA, May 2000. (Abstract).

Majumdar, R.S., Liu, S.-L., K.E. Sanderson and Johnston, R.N. 1999. The Adopt-Adapt Model of Bacterial Speciation: Genomic Insertions and Rebalancing in Salmonella typhi and other Bacteria. Presented at the 99th Annual Meeting of the American Society for Microbiology, Chicago, IL USA, May 1999, H-63, page 97 (Abstract).

Pabbaraju, K., Miller, W.L. and K.E. Sanderson. 1999. Analysis of Intervening Sequences in the 23S ribosomal RNA genes of Salmonella species. Presented at the 99th Annual Meeting of the American Society for Microbiology, Chicago, IL USA, May 1999, H-46, page 96 (Abstract).

Ng, I., S.-L. Liu, and K.E. Sanderson. 1998. The role of genomic rearrangements in producing new ribotypes in Salmonella typhi. Presented at the 8th Biennial Conference on Infectious Diseases, Banff Alberta, May 1998, p. 13 (Abstract)

Liu, S.-L., A. Schryvers, K.E. Sanderson, and R.N. Johnston. 1998. Population genome structure of Pasteurella haemolytica and Pasteurella multocida. Presented at the 8th Biennial Conference on Infectious Diseases, Banff Alberta, May 1998, p. 29 (Abstract)

Liu, S.-L., and K.E. Sanderson. 1998. Homologous recombination between rrn operons rearranges the chromosome of Salmonella, but only between host-specialized species. Presented at the 48th Annual Canadian Society of Microbiologists meeting, Guelph, ON, June 1998, Gmp6, p. 67 (Abstract).

Ng, I., S.-L. Liu, and K.E. Sanderson. 1998. The role of genomic rearrangements in producing new ribotypes in Salmonella typhi. Presented at the 48th Annual Canadian Society of Microbiologists meeting, Guelph, ON, June 1998, Gmp8, p. 68 (Abstract).

Liu, S.-L., Qi, C. P.-F., V. Stewart, and K. E. Sanderson. 1997. A genome map of Klebsiella oxytoca M5al. Presented at the 97th Annual Meeting of the American Society for Microbiology, Miami, FL, USA, May 1997, H-7, page 484 (Abstract).

Liu, S.-L. and K.E. Sanderson. 1997. Genome structures of Salmonella species in subgroup I. Presented at the 97th Annual Meeting of the American Society for Microbiology, Miami, FL, USA, May 1997, H-7, page 484 (Abstract). w

Liu,S.-L., A. Buret, and K. E. Sanderson. 1997. Salmonella typhi wild type strains differ in transcytosis, intracellular multiplication, and cytotoxicity. Presented at the 97th Annual Meeting of the American Society for Microbiology, Miami, FL, USA, May 1997, H-7, page 484 (Abstract).

Liu, S.-L. and K.E. Sanderson. 1996. Diverse genome construction in Haemophilus influenzae. To be presented at the 96th Annual Meeting of the American Society for Microbiology, New Orleans, LA, USA, May 1996, H-51, page 492 (Abstract).

Mattatall, N., and K.E. Sanderson. 1996. Intervening sequences (IVSs) in 23S rDNA. Presented at the 96th Annual Meeting of the American Society for Microbiology, New Orleans, LA, USA, May 1996, H-7, page 484 (Abstract).

Liu, S.-L. and K.E. Sanderson. 1996. The genome of Salmonella typhi is highly plastic. To be presented at the 96th Annual Meeting of the American Society for Microbiology, New Orleans, LA, USA, May 1996, H-50, page 492 (Abstract).

Liu, S.-L. and K.E. Sanderson. 1996. Structure of the genome of the bacterium Klebsiella pneumoniae. Presented at the Annual Meeting of the Canadian Society of Microbiologists, Charlottetown PEI, June 1996.

Sanderson, K.E., A. Hessel, and S.-L. Liu. 1995. The chromosomes of Salmonella typhi and S. paratyphi C are rearranged in comparison with those of E. coli K-12, S. typhimurium LT2, and other Salmonella spp. Abstract, meeting on "The Bacterial Chromosome", Santa Fe, NM, Jan 1995, Keystone Symposia of Molecular and Cellular Biology, to be published in J. Cellular Biochemistry, supplement 19A, Wiley-Liss Inc., NY.

Hessel, A., S.-L. Liu, and K. E. Sanderson. 1995. The chromosome of S. paratyphi C contains an inversion and is rearranged relative to S. typhimurium LT2. Presented at the 95th Annual Meeting of the American Society for Microbiology, Washington DC, May 1995

N. Mattatall and K. E. Sanderson. 1995. Salmonella typhimurium is heterogeneous for 23 S RNA intervening sequences. Presented at the 95th Annual Meeting of the American Society for Microbiology, Washington DC, May 1995.

S. L. Liu and K. E. Sanderson. 1995. Speciation of Salmonella paratyphi A inferred fom its genomic structure. Presented at the 95th Annual Meeting of the American Society for Microbiology, Washington DC, May 1995.


SGSC Homepage - About the SGSC - On-Line Search - Strain Kits - On-Line Order Form - Strain Catalogue - Salmonella Sequences - Related Websites