| Research/review articles and book chapters |
|---|
| 34. Mark S.P. Sansom, Peter Bond, Oliver Beckstein, Philip C. Biggin, José Faraldo-Gómez, Richard J. Law, George Patargias, D. Peter Tieleman. "Water in ion channels and pores - simulation studies", in Novartis Found. Sympos. 245, in press. |
| 33. I.H. Shrivastava, D.P. Tieleman, P.C. Biggin, M.S.P. Sansom. K+ vs. Na+ ions in a K channel selectivity filter: a simulation study. Submitted. |
| 32. S.J. Marrink, D.P. Tieleman. Molecular dynamics simulation of a cubic - hexagonal phase transition. Submitted. |
| 31. S.J. Marrink, D.P. Tieleman. Molecular dynamics simulation of a cubic membrane phase. Submitted. |
| 30. Craig M. Shepherd, Hans J. Vogel, D. Peter Tieleman. "Molecular modeling in membrane protein design and egineering", in Recent research developments in protein engineering, in press |
| 29. Michael Herrenbauer, D. Peter Tieleman, Clemens Posten. 2001. Molecular modelling of diffusional motion and transfer of pyrene in lipid membranes, in press, Computer Applications in Biotechnology 8 |
| 28. C.T. Choma, D.P. Tieleman, D. Cregut, L. Serrano, H.J.C. Berendsen. 2001. Design and computational characterization of a membrane protein, in press, J. Mol. Graph. Mod. |
| 27. D.P. Tieleman, G.R. Smith, P.C. Biggin, M.S.P. Sansom. 2001. Simulation approaches to ion channel structure-function relationships, in press, Quart. Rev. Biophys. |
| 26. D.P. Tieleman, I.H. Shrivastava, M.B. Ulmschneider, M.S.P. Sansom. 2001. Proline-induced hinges in trans-membrane helices: possible roles in ion-channel gating, PROTEINS: Struct. Func. Genet. 44, pp. 63-72 |
| 25. D.P. Tieleman, M.S.P. Sansom. 2001. Molecular dynamics simulations of antimicrobial peptides: from membrane binding to transmembrane channels, Int. J. Quantum Chem. 83, pp. 166-179 |
| 24. D.P. Tieleman, H.J.C. Berendsen, M.S.P. Sansom. 2001. Voltage-dependent insertion of a channel forming peptide: molecular dynamics simulations of alamethicin at phospholipid/water and octane/water interfaces, Biophys. J. 80, pp. 331-346 |
| 23. D.P. Tieleman et al, Something to do with alamethicin bundles consisting of 4-8 helices, in preparation |
| 22. S.J. Marrink, D.P. Tieleman, A.E. Mark. 2000. Molecular dynamics simulations of micellization kinetics, J. Phys. Chem. B 104, pp. 12165-12173 |
| 21. D. P. Tieleman, D. van der Spoel, H.J.C. Berendsen. 2000. Molecular dynamics simulations of dodecylphosphocholine micelles at three different aggregate sizes: micellar structure and lipid chain relaxation, J. Phys. Chem. B 104, pp. 6380-6388 |
| 20. R.J. Law, L.R. Forrest, K.M. Ranatunga, P. La Rocca, D.P. Tieleman, M.S.P. Sansom. 2000. Structure and dynamics of the pore-lining helix of the nicotinic receptor: MD simulations in water, lipid bilayers and transbilayer bundles, PROTEINS: Struct. Func. Genet. 39, pp. 47-55 |
| 19. L.R. Forrest, A. Kukol, I.T. Arkin, D.P. Tieleman, M.S.P. Sansom. 2000. Exploring models of the Influenza M2 channel - MD simulations in a phospholipid bilayer, Biophys. J. 78, pp. 55-69 |
| 18. P. La Rocca, P. Biggin, D.P. Tieleman, M.S.P. Sansom. 1999. Simulation studies of the interaction of antimicrobial peptides and lipid bilayers, Biochim. Biophys. Acta 1462, pp. 185-200 |
| 17. M.S.P. Sansom, D.P. Tieleman, H.J.C. Berendsen. 1999. "The mechanism of channel formation by alamethicin as viewed by molecular dynamics simulations", in: Gramicidin and related ion channel forming peptides, Wiley: Chichester. Novartis Found. Symp. 225, pp. 128-145 |
| 16. L.R. Forrest, D.P. Tieleman, M.S.P. Sansom. 1999. Defining the transmembrane helix of M2 protein from Influenza A by molecular dynamics simulations in a lipid bilayer, Biophys. J. 76, pp. 1886-1896 |
| 15. D.P. Tieleman, H.J.C. Berendsen, M.S.P. Sansom. 1999. Surface binding of alamethicin stabilises its helical structure: molecular dynamics simulations, Biophys. J. 76, pp. 3186-3191 |
| 14. D.P. Tieleman, H.J.C. Berendsen, M.S.P. Sansom. 1999. An alamethicin channel in a bilayer: molecular dynamics simulations, Biophys. J. 76, pp. 1757-1769 |
| 13. D.P. Tieleman, M.S.P. Sansom, H.J.C. Berendsen. 1999. Alamethicin helices in a bilayer and in solution: molecular dynamics simulations, Biophys. J. 76, pp. 40-49 |
| 12. D.P. Tieleman, J. Breed, H.J.C. Berendsen, M.S.P. Sansom. 1998. Alamethicin channels in a membrane: molecular dynamics simulations, Faraday Discuss. 111, pp. 209-223 |
| 11. D.P. Tieleman, L. Forrest, M.S.P. Sansom, H.J.C. Berendsen. 1998. Lipid properties and the orientation of aromatic residues in OmpF, Influenza M2 and Alamethicin systems: Molecular dynamics simulations, Biochemistry 37, pp. 17554-17561 |
| 10. D.P. Tieleman, H.J.C. Berendsen. 1998. A molecular dynamics study of the pores formed by E. coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylethanolamine bilayer, Biophys. J. 74, pp. 2786-2801. (see also New and Notable, same issue) |
| 9. M.S.P. Sansom, D.P. Tieleman, L.R. Forrest, H.J.C. Berendsen. 1998. Molecular dynamics simulations of membranes with embedded ion channels: porin, alamethicin, and influenza M2, Biochem. Soc. Transac. 26, pp. 438-443 |
| 8. M.S.P. Sansom, I.D. Kerr, R. Law, L. Davison, D.P. Tieleman. 1998. Modelling the packing of transmembrane helices: Application to Aquaporin 1, Biochem. Soc. Transac. 26, pp. 509-515 |
| 7. H.J.C. Berendsen, D.P. Tieleman. 1998. Molecular dynamics: Studies of lipid bilayers, Encyclopedia of Computational Chemistry, P. von Rague Schleyer (ed. in chief), volume 3, pp. 1639-1650, John Wiley & Sons |
| 6. S.J. Marrink, O. Berger, D.P. Tieleman, F. Jaehnig. 1998. Adhesion forces of lipids in a phospholipid membrane studied by molecular dynamics simulations, Biophys. J. 74, pp. 931-943 |
| 5. D.P. Tieleman, S.J. Marrink, H.J.C. Berendsen. 1997. A computer perspective of membranes: Molecular dynamics studies of lipid bilayers systems, Biochim. Biophys Acta 1331, pp. 235-270 |
| 4. D. van der Spoel, A.R. van Buuren, D.P. Tieleman, H.J.C. Berendsen. 1996. Molecular dynamics simulations of peptides from BPTI: A closer look at amide-aromatic interactions, J. Biomol. NMR 8, pp. 229-238 |
| 3. S-J. Marrink, D.P. Tieleman, A.R. van Buuren, H.J.C. Berendsen. 1996. Membranes and water: An interesting relationship, Faraday Discuss. 103, pp. 191-200 |
| 2. A.R. van Buuren, D.P. Tieleman, J. de Vlieg, H.J.C. Berendsen. 1996. Cosurfactants lower surface tension of the diglyceride/water interface: A molecular dynamics study, Langmuir 12, pp. 2570-2579 |
| 1. D.P. Tieleman, H.J.C. Berendsen. 1996. Molecular dynamics simulations of fully hydrated DPPC with different macroscopic boundary conditions and parameters, J. Chem. Phys. 105, pp. 4871-4880 |
| Thesis, video, manual, abstracts |
| xiii. M.B. Ulmschneider, D.P. Tieleman, M.S.P. Sansom. 2001. Computer simulations of the 7 TM a-helices of bacteriorhodopsin, Biophys. J. 80, 102 |
| xii. M.S.P. Sansom, I.H. Shivastava, O.S. Smart, D.P. Tieleman. 2001. Channel gating and proline-containing helices - Simulation studies of Kv S6 and related systems, Biophys. J. 80, 708 |
| xi. D.P. Tieleman, M.S.P. Sansom. 2001. Voltage-dependent interactions between alamethicin and model membranes, Biophys. J. 80, 2449 |
| x. J. Bentz, D.P. Tieleman Molecular dynamics of hydrophobic defects in membrane fusion, Biophys. J. 78, p. 60a, 2000 |
| ix. D.P. Tieleman, G.A. Woolley, M.S.P. Sansom Alamethicin as model system for ion selectivity: computational studies, Biophys. J. 78, p. 174a, 2000 |
| viii. D. van der Spoel, A.R. van Buuren, E. Apol, P.J. Meulenhoff, D.P. Tieleman, A.L.T.M. Sijbers, B. Hess, K.A. Feenstra, E. Lindahl, R. van Drunen, H.J.C. Berendsen, Gromacs User Manual version 2.0, Nijenborgh 4, 9747 AG Groningen, The Netherlands. Internet: http://md.chem.rug.nl/~gmx, 1999 |
| vii. M.S.P. Sansom, D.P. Tieleman, H.J.C. Berendsen Alamethicin: molecular dynamics simulations of a channel-forming peptide, Biophys. J. 76, p. a444, 1999 |
| vi. D.P. Tieleman, C.T. Choma, H.J.C. Berendsen The use of molecular dynamics in De Novo design: application to a transmembrane four-helix coiled coil, Biophys. J. 76, p. a426, 1999 |
| v. D.P. Tieleman, Theoretical studies of membrane models: molecular dynamics of water, lipids and membrane proteins. PhD thesis, University of Groningen, 14 December 1998. ISBN: 90 367 0997 0 |
| iv. D.P. Tieleman and H.J.C. Berendsen A molecular dynamics study of the pores formed by E.coli OmpF porin in a fully hydrated POPE bilayer, Biophys. J. 74, p. a392, 1998 |
| iii. M.S.P. Sansom, J. Breed, H.J.C. Berendsen, D.P. Tieleman Alamethicin channels-simulation studies, Biophys. J. 74, p. a232, 1998 |
| ii. D.P. Tieleman, J.J. Lopez Cascalez, H.J.C. Berendsen, Molecular Dynamics Studies of Lipids and Proteins of the E. coli Outer Membrane: POPE and OMPF, in Progress in Biophysics and Molecular Biology 65, 1996, supplement XIIth International Biophysics Congress, 11-16 August 1996, Amsterdam |
| i. Video movie 'Van picoseconde tot nanoseconde: Moleculaire beweging in celmembranen'. RUG/Biophysical Chemistry, Nijenborgh 4, 9747 AG Groningen, 1996. For more information, mail me. |
last modified: 26 Dec 2000